Deutsche Bahn has revamped their schedule and fare webpage. there's now a lot more "white space" (search results are more spread out. More scrolling.) but everything still seems to be there. I do think I've had some problems with the search date. Seems like I put in 9:00 and it started me with 5 something, and I had to click on "later" to see 9:00. Several times but not always.
The page opens with all the options, stopovers and mode of transport, showing, but if you get a list of connections, you have to click on "changes" twice ("changes", then "change other data") to see them again.