Try to fill in some of the gaps.
First thing to remember is that all rail lines in Switzerland have at least one train per hour. Many have more (one train every 30 minutes). It is designed to be a "turn-up-and-go" service. None of that "booking seats" rubbish they have in other countries. Treat it like a lift (elevator) in your local high rise, turn up, wait for one going in the correct direction, get one, get off at the correct location - simple.
Second thing is it is a network of interconnecting routes. You cannot drive from Metropolis to Smallville going on the same road all the way without turning at any junctions, you start on Interstate 123. then interstate 456, then a state road and finally a county road. Same going from Zürich airport to Mürren, an intercity, then a regional express, then a local, . . .
I hope the above analogies help.
Q1) How long to get out of Zürich airport? - 30-60 minutes, but it doesn't matter as there is a train from "Zürich Flughafen" (the station at the airport) to Luzern every 30 minutes. You just get on the next one.
Q2) "To get on a Golden Pass train, will we need to transfer trains in Luzern?" - Yes (as above).
The "Golden Pass" is a marketing name for a route from Luzern to Montreux. It is not one train, you have to change trains, 3 or 4 are required to get from Luzern to Montreux:
Luzern - Interlaken - Spiez -Zweisimmen - Montreux.
Q3) "Do all Golden Pass Trains allow passengers to get off at Interlaken Ost?" - any train lets you get on and off at any intermediate station, that is why they stop there. And, you MUST change trains at Interlaken Ost. All trains terminate at Interlaken Ost, and you need to get on a different one.
Q4) "Can we buy a Swiss Travel Pass now, or do we need to wait?" - I very much doubt you can buy now for next June. Either buy online in May (SBB website), or at Zürich Flughafen station when you land. The price is the same both ways. No discount for advance purchase.
Q5) "I've heard that the lifts to Murren, Gimmelwald, and the Schilthorn, are going from included to discounted with the travel pass."
Here is a map of what is included this year: https://www.sbb.ch/content/dam/sbb/de/infotexte/uebersichtskarte-sts.pdf
You can also use that map for your planning, it shows all Swiss rail lines.
Up as far as Mürren and Gimmewald (which is really just an extension of Mürren) is public transport so the pass definately covers you. From Mürren up to Schilthorn is a tourist line, it was included this year, I have no idea whether it will be next year, presumably the marketing department knows, I don't.