I've been planning our trip to the Alps for 2 years. Look into the availabilty of summercards, which give you a discount/free access to cable cars, trains, busses and other activities. The Appenzeler card looks like a pretty good deal, and though I didn't read the details, some of their hotels offer "arrive free" deals that include passes that cover the cost of train travel to Appenzell.
My interest in Appenzell was fueled by fascination in the geology of the region, and in particular, Santis mountain, which is on a uplift ridge described by a Swiss geology professor as the most interesting formation in the country. I do believe the gondola to the top of Santis is covered by the summercard. We will not be in the area long enough to get one, but have made reservations on Lake Brienz (Interlaken/Lauterbrunnen) at a hotel with a pass that includes free boat rides on the lake and train ride to the top of the Rothorn. We also are taking advantage of a summercard in San Moritz that includes free use of the public transporation, mountain railways, and part of the Bernina express.
Just include "summercard" when you search for lodging. Also, think about the Swiss rail cards which include discounts on attractions, including cable cars.
Lauterbrunnen is spectacular. We have been to the area twice but believe it is one of the most beautiful places on the planet. Recommend Trummelbach Falls and the cable car to Schilthorn, but encourage you to get up early so your views aren't lost to developing clouds at the higher altitudes. Is expensive, which may justify the rail pass, especially if you are arriving by train from Italy. Not far away are Reichenbach Falls and the Aare Gorge, which are amazing, and the falls is where Sherlock Holmes fell to his fictional death, accessible by public transport and not as expensive.
As I keep reminding myself, wherever you are in the Alps is beautiful. Create an itinerary that recognizes you have a little one who has unique interests. And that may make it worth looking at places near Lake Lucerne and Mt. Pilatus, with the Lucerne Pass, that covers chocolate tasting in Lucerne, boat rides on the lake and an amusement park at the top of Mt. Pilatus.
I hope that helps you complete your itinerary. Have a wonderful summer.