I like Varenna and we stayed there before covid, and before my wife got her white cane and rollator (4 wheeled walker). At that point we had no issues with the walk along the main road or the lower one, or joining both with some of the lanes, or getting to and onto the different ferries at the dock.
Granted that everything is up from the water, but I would say that the main road is nearly the highest bit, the church a little higher and the multi-storey car park a little higher still, but my memory is that the main road from the water is maybe 2 or 2 and a half stories to at most 3 stories. Depending on your wife's mobility issues she may be ok with that. I am confident that mine could if I was guiding her and we stopped halfway. The only problem with the rollator is that because the white cane mounts to the side and only the top is visible motorists and pedestrians don't recognise it for what it is and often don't give her the room she needs - that's why I guide her.
If there is anything else I can do to aid with access issues I'm happy to help.