Your arrival 1/2 day is really a throwaway: drop the bags and take a walk before dark and dinner. Most guidebooks have some suggested routes to explore.
With your 2 FULL, unplanned days, do the Accademia and Uffizi on one and the duomo complex (cathedral/baptistry/crypt/museum/bell tower) on the other. Check the details on all to make sure what it on your schedule will be open (Uffizi and Accademia are closed on Mondays).
Just a a few Florentine churches of note: San Miniato (a must-do, IMHO, and that's where you'll get a view), Santa Maria Novella, Santa Croce (Michelangelo is buried here), Santissima Annunziata (on an important piazza +some really good Renaissance frescoes in the entry cloister), Santa Trinita (the frescoes in the Sassetti Chapel are captures of real people in the 16th century), San Marco church/convent museum. Explore your options here and see a few as you have time and/or are nearby.
https://www.visitflorence.com/florence-churches/
Even in winter I'd pre-order tickets for the Uffizi to avoid long ticket lines. You can do that here (and for the Accademia as well) and will have to choose a specific day and time slot:
http://www.b-ticket.com/b-ticket/uffizi/default_eng.aspx
Combo tickets for the Duomo complex can be pre-purchased here. If interested in climbing the dome, you will need to make a prior reservation and can do that on the website:
https://www.museumflorence.com
I'll agree that a "trip around Tuscany to wineries and Siena" is too much for a winter day very short on daylight. Maybe substitute the winery tour with an evening visit to an enoteca in Florence instead as Siena can take up a whole day. Some other posters may have some ideas there, and here are some from a local fan of the grape:
https://thecuriousappetite.com/2019/04/28/where-to-drink-wine-and-enotecas-in-florence-italy/