The most logical order for those 4 islands would be Fourni-Patmos-Astypalaia-Amorgos or the other way round. Both ways you can include Kalymnos between Patmos and Astypalaia.
Ferries:
Fourni -> Patmos: Dodekanisos Seaways on Fridays and Sundays.
Patmos -> Astypalaia: Dodekanisos Seaways on Monday
If you would go the other way round it will be on Thursday from Astypalaia to Patmos and on Sunday and Thursday from Patmos to Fourni. The last Dodekanisos Seaways sailing from Astypalaia Northbound is on 24 September this year.
Astypalaia -> Amorgos (Aegiali): 3 times a week (Tuesday, Thursday & Friday) with Blue Star Ferries. The schedule beyond 31 March is not published yet but normally it should be like it has been for many years now.
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If you want to include Kalymnos you have Dodekanisos Seaways:
From Patmos to Kalymnos every day except on Thursday. There are 5 days where you have 2 sailings.
From Kalymnos to Patmos there is a daily sailing and on 3 days (Friday, Saturday, Sunday)
Next to that there are also 2 sailings weekly (in both directions) with Blue Star Ferries. But in one direction it's late evening and the other direction it's in the middle of the night. So these are probably not very convenient.
Just to add: if you plan on taking Dodekanisos Seaways for some of your trips, subscribe for their loyalty program through their website. As a member you get 20% discount on every ticket. Every person has to subscribe individually.
Dodekanisos Seaways itineraries 2026: https://www.12ne.gr/en/itineraries
Dodekanisos Seaways loyalty program: https://www.12ne.gr/en/bonusways
In the tender for the subsidised routes for the next 4 years I spotted a new route Piraeus-Astypalea-Kalymnos-Kos-Nisyros-Tilos-Rhodes. That would be once a week. It remains to be seen if a company is interested (or if multiple are) in that route and if so which company wins the bid.
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Besides Dodekanisos Seaways there are some others on these routes:
SAOS Ferries goes 3-4 times a week from Kalymnos to Patmos and also the other way round. However there is nothing known yet about the outcome of the tender for the subsidised routes for the next 4 years.
The same goes for the ANE Kalymnou ferry that normally goes 4 times/week on the Kalymnos-Astypalaia route.
Fyi: I will be on Astypalaia from 7 till 14 September and on Kalymnos from 15 September till 20 October.