normally if DB uses the word Bahnhof (which you are right, it does mean train station) that is usually the name of the bus stop at the station. If it is for the train it just has the name of the station, usually the same as the town.
The DB online service shows the route, regardless of mode of transport. It is possible to adjust that so it only shows trains, even what type of train, but the default looks for the quickest solution among boat, train, bus, S-Bahn. U-Bahn, taxi and straßenbahn.
You probably saw something like:
Bahnhof, Füssen 12:45 1:38 0 BUS Fares not available
No OnlineTickets possible
Bahnhof, Oberammergau 14:23
which is for a bus, specifically
Bus 9606 Bus Direction: Bahnhof, Garmisch-Partenkirchen
Behindertengerechtes Fahrzeug
Operator: Regionalverkehr Oberbayern
The train from Füssen to Oberammergau (after the faster bus is deselected) shows something like:
Füssen 10:05 4:07 2 BRB, RB 25,00 EUR 41,30 EUR
Oberammergau 14:12
which indicates there will be 2 changes and it will be over both BRB (Bavarian regional trains) and RB (DB regional trains). You even get a fare quote. The start and finish points are just a few metres apart from the previous solution - one on the rails and one on the road outside. The first change is at Munich Pasing and the second at Murnau.
I hope that explanation of some of the more esoteric uses of the DB travel planner helps....
By the way - the term "Behindertengerechtes Fahrzeug" means that the trains have facilities for disabled passengers.