"Days of operation: not every day, 11. Apr until 6. Jun 2019" = This train runs on the day you have selected, and some other days between 11th April and 6th June. But it does not run every day, so don't assume it will run on any other day without checking that date.
We only sell tickets for trains which run.
Train times are fixed months in advance, and, in the case of international trains like this one, agreed between the railway companies involved (DB, ÖBB, MAV).
Do you mean 06:11 (morning) or 18:11? I looked on DB, and found a 06:11 on 30th April, arriving Budapest 13:19 with one change in Vienna, and an 07:11 with no changes arriving 14:19.
Both trains go via Salzburg and stop there. There is no advantage to going to Salzburg first, it is the same train.
Times and intermediate stops for the 06:11 trains:
Train RJX 265
München Hbf dep 06:11
München Ost dep 06:21
Rosenheim arr 06:53 dep 07:03
Salzburg Hbf arr 08:02 dep 08:08
Linz Hbf arr 09:14 dep 09:16
St.Pölten Hbf arr 10:00 dep 10:02
Wien Meidling arr 10:23 dep 10:25
Wien Hbf arr 10:30
Train EC143
Wien Hbf dep 10:42
Hegyeshalom arr 11:25 dep 11:28
Mosonmagyarovar arr 11:35 dep 11:36
Györ arr 11:53 dep 11:56
Tatabanya arr 12:29 dep 12:30
Kelenföld arr 13:02 dep 13:04
Budapest-Keleti arr 13:19