If you arrive at CDG it is 50 or 55 by cab to your hotel (depending on side or river); if Orly then 30 or 35. It is 10 Euro on the RER/metro into Paris and 12.50 (and a PITA ) from ORY by public transport.
The absolute best pass for you is the Navigo Decouverte which runs Mon-Sunday and so will be good for your second week only; it will take you to Versailles, to other places in the Ile de France (it is good for all 5 zones) and will take you to CDG if you are flying from there. For the Sat-Sun you can buy a carnet of ordinary tickets and share them for travel in Zone 1 (Paris) If you are 25 or younger you can get weekend day passes for sat and sun called Ticket Jeune; you can get them for about 3.50 for zone 1 (Paris) or more if you need to include the wider area zones 2-5. The ND is about 23 Euro for the week plus 5 Euro for the renewable pass; you need a head shot which you can just size and print on any paper on your computer (size 25/30 mm) You can buy the ND at the airport RER station or any metro station. You can buy it when you arrive although it won't be usable until Monday -- but if you are taking the RER into Paris then just buy it when you buy those tickets and you are set for the rest of the time.
If a carnet ticket doesn't work then it might have become demagnetized; the information agents at the metro will replace them if not used. Be sure to throw away the ticket when you have left the metro so they don't get confused with good tickets. And if you have magnetic closures on purses or coats be careful; if you demagnetize your ticket when traveling you could get fined for not having a valid ticket.
The river cruises are not covered on any pass; you just walk up and buy a ticket when you want to go; they are cheap.
Don't buy any 'pass' that pretends to include cruises and hohos as well as museums and public transport -- they are hellaciously overpriced and just consist of separate items you can buy for less when you get there. e.g. they throw an overpriced Paris Visite transport pass and a Museum Pass in an envelope and a hoho ticket etc and call it a 'pass'. The museum pass is probably a good idea; you can buy it at any participating museum so just choose one without lines like the Cluny or get it at a tourist office at the airport.
The HOHO bus is not good transportation although I guess you could use it on the weekend; it is slow and you wait a lot. You can buy a 2 days ticket on the bus; no need to decide or buy before you get there. Foxcity has a 2 hour open top bus tour that might be a nice idea if you just want that kind of overview --